Legris, M., Ince, Y. C. & Fankhauser, C. Molecular mechanisms underlying phytochrome-controlled morphogenesis in vegetation. Nat. Commun. 10, 5219 (2019).
Burgie, E. S. & Vierstra, R. D. Phytochromes: an atomic viewpoint on photoactivation and signaling. Plant Cellular 26, 4568–4583 (2014).
Auldridge, M. E. & Woodland, Okay. T. Bacterial phytochromes: greater than meets the sunshine. Crit. Rev. Biochem. Mol. Biol. 46, 67–88 (2011).
Rockwell, N. C., Su, Y. S. & Lagarias, J. C. Phytochrome construction and signaling mechanisms. Annu. Rev. Plant Biol. 57, 837–858 (2006).
Franklin, Okay. A. & Quail, P. H. Phytochrome purposes in Arabidopsis construction. J. Exp. Bot. 61, 11–24 (2010).
Jung, J. H. et al. Phytochromes serve as as thermosensors in Arabidopsis. Science 354, 886–889 (2016).
Legris, M. et al. Phytochrome B integrates mild and temperature alerts in Arabidopsis. Science 354, 897–900 (2016).
Burgie, E. S. et al. Differing biophysical homes underpin the original signaling potentials inside the plant phytochrome households. Proc. Natl Acad. Sci. USA 118, e2105649118 (2021).
Essen, L. O., Mailliet, J. & Hughes, J. The construction of a whole phytochrome sensory module within the Pr floor state. Proc. Natl Acad. Sci. USA 105, 14709–14714 (2008).
Wagner, J. R., Brunzelle, J. S., Woodland, Okay. T. & Vierstra, R. D. A mild-sensing knot printed by way of the construction of the chromophore-binding area of phytochrome. Nature 438, 325–331 (2005).
Yang, X., Kuk, J. & Moffat, Okay. Crystal construction of Pseudomonas aeruginosa bacteriophytochrome: photoconversion and sign transduction. Proc. Natl Acad. Sci. USA 105, 14715–14720 (2008).
Takala, H. et al. Sign amplification and transduction in phytochrome photosensors. Nature 509, 245–248 (2014).
Burgie, E. S., Zhang, J. & Vierstra, R. D. Crystal construction of Deinococcus phytochrome within the photoactivated state finds a cascade of structural rearrangements throughout photoconversion. Construction 24, 448–457 (2016).
Burgie, E. S. et al. Photoreversible interconversion of a phytochrome photosensory module within the crystalline state. Proc. Natl Acad. Sci. USA 117, 300–307 (2020).
Isaksson, L. et al. Signaling mechanism of phytochromes in resolution. Construction 29, 151–160 (2021).
Anders, Okay., Daminelli-Widany, G., Mroginski, M. A., von Stetten, D. & Essen, L. O. Construction of the cyanobacterial phytochrome 2 photosensor implies a tryptophan transfer for phytochrome signaling. J. Biol. Chem. 288, 35714–35725 (2013).
Bhoo, S. H., Davis, S. J., Walker, J., Karniol, B. & Vierstra, R. D. Bacteriophytochromes are photochromic histidine kinases the use of a biliverdin chromophore. Nature 414, 776–779 (2001).
Yeh, Okay. C., Wu, S. H., Murphy, J. T. & Lagarias, J. C. A cyanobacterial phytochrome two-component mild sensory gadget. Science 277, 1505–1508 (1997).
Li, F. W. et al. Phytochrome range in inexperienced vegetation and the starting place of canonical plant phytochromes. Nat. Commun. 6, 7852 (2015).
Rockwell, N. C. & Lagarias, J. C. Phytochrome evolution in three-D: deletion, duplication, and diversification. New Phytol. 225, 2283–2300 (2020).
Yeh, Okay. C. & Lagarias, J. C. Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry. Proc. Natl Acad. Sci. USA 95, 13976–13981 (1998).
Boylan, M. T. & Quail, P. H. Are the phytochromes protein kinases? Protoplasma 195, 12–17 (1996).
Elich, T. D. & Chory, J. Phytochrome: if it appears and scents like a histidine kinase, is it a histidine kinase? Cellular 91, 713–716 (1997).
Ni, W. et al. A mutually confident destruction mechanism attenuates mild signaling in Arabidopsis. Science 344, 1160–1164 (2014).
Buckley, C. E. et al. Reversible optogenetic regulate of subcellular protein localization in a reside vertebrate embryo. Dev. Cellular 36, 117–126 (2016).
Chernov, Okay. G., Redchuk, T. A., Omelina, E. S. & Verkhusha, V. V. Close to-infrared fluorescent proteins, biosensors, and optogenetic gear engineered from phytochromes. Chem. Rev. 117, 6423–6446 (2017).
Levskaya, A., Weiner, O. D., Lim, W. A. & Voigt, C. A. Spatiotemporal regulate of mobile signalling the use of a light-switchable protein interplay. Nature 461, 997–1001 (2009).
Shimizu-Sato, S., Huq, E., Tepperman, J. M. & Quail, P. H. A mild-switchable gene promoter gadget. Nat. Biotechnol. 20, 1041–1044 (2002).
Krall, L. & Reed, J. W. The histidine kinase-related area participates in phytochrome B serve as however is dispensable. Proc. Natl Acad. Sci. USA 97, 8169–8174 (2000).
Matsushita, T., Mochizuki, N. & Nagatani, A. Dimers of the N-terminal area of phytochrome B are useful within the nucleus. Nature 424, 571–574 (2003).
Burgie, E. S. et al. Photosensing and thermosensing by way of phytochrome B require each proximal and distal allosteric options inside the dimeric photoreceptor. Sci. Rep. 7, 13648 (2017).
Burgie, E. S., Bussell, A. N., Walker, J. M., Dubiel, Okay. & Vierstra, R. D. Crystal construction of the photosensing module from a crimson/far-red light-absorbing plant phytochrome. Proc. Natl Acad. Sci. USA 111, 10179–10184 (2014).
Nagano, S. et al. Structural insights into photoactivation and signalling in plant phytochromes. Nat. Vegetation 6, 581–588 (2020).
Diensthuber, R. P., Bommer, M., Gleichmann, T. & Moglich, A. Complete-length construction of a sensor histidine kinase pinpoints coaxial coiled coils as sign transducers and modulators. Construction 21, 1127–1136 (2013).
Wang, C. et al. Mechanistic insights printed by way of the crystal construction of a histidine kinase with sign transducer and sensor domain names. PLoS Biol. 11, e1001493 (2013).
Cai, Y. et al. Conformational dynamics of the crucial sensor histidine kinase WalK. Acta Crystallogr. D 73, 793–803 (2017).
On line casino, P., Rubio, V. & Marina, A. Structural perception into spouse specificity and phosphoryl switch in two-component sign transduction. Cellular 139, 325–336 (2009).
Lagarias, J. C. & Mercurio, F. M. Construction serve as research on phytochrome. Identity of light-induced conformational adjustments in 124-kDa Avena phytochrome in vitro. J. Biol. Chem. 260, 2415–2423 (1985).
Jones, A. M., Vierstra, R. D., Daniels, S. M. & Quail, P. The position of separate molecular domain names within the construction of phytochrome from etiolated Avena sativa L. Planta 164, 501–516 (1985).
Li, H., Zhang, J., Vierstra, R. D. & Li, H. Quaternary group of a phytochrome dimer as printed by way of cryoelectron microscopy. Proc. Natl Acad. Sci. USA 107, 10872–10877 (2010).
Gourinchas, G. et al. Lengthy-range allosteric signaling in crimson light-regulated diguanylyl cyclases. Sci. Adv. 3, e1602498 (2017).
Etzl, S., Lindner, R., Nelson, M. D. & Winkler, A. Construction-guided design and useful characterization of a synthetic crimson light-regulated guanylate/adenylate cyclase for optogenetic packages. J. Biol. Chem. 293, 9078–9089 (2018).
Mechaly, A. E., Sassoon, N., Betton, J. M. & Alzari, P. M. Segmental helical motions and dynamical asymmetry modulate histidine kinase autophosphorylation. PLoS Biol. 12, e1001776 (2014).
Shin, A. Y. et al. Proof that phytochrome purposes as a protein kinase in plant mild signalling. Nat. Commun. 7, 11545 (2016).
Klose, C., Nagy, F. & Schafer, E. Thermal reversion of plant phytochromes. Mol. Plant 13, 386–397 (2020).
Klose, C. et al. Systematic research of the way phytochrome B dimerization determines its specificity. Nat. Vegetation 1, 15090 (2015).
Rensing, S. A., Sheerin, D. J. & Hiltbrunner, A. Phytochromes: greater than meets the attention. Tendencies Plant Sci. 21, 543–546 (2016).
Kikis, E. A., Oka, Y., Hudson, M. E., Nagatani, A. & Quail, P. H. Residues clustered within the light-sensing knot of phytochrome B are important for conformer-specific binding to signaling spouse PIF3. PLoS Genet. 5, e1000352 (2009).
Ni, W. et al. PPKs mediate direct sign switch from phytochrome photoreceptors to transcription issue PIF3. Nat. Commun. 8, 15236 (2017).
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